Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015940395.1_cds_XP_016484653.1_75650
CDS Infomation

[gene=LOC107805174] [db_xref=GeneID:107805174] [protein=pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like] [protein_id=XP_016484653.1] [location=complement(21221..22810)] [gbkey=CDS]
Sequence

ATGAATCATCTGTACTTGCTCCGTTCTATTCGATTAACTTTTCAGTATCTGCCAGTCTAT
ATAAGATTCCAAAGTTCACCCTGTAGACGCCTTCGCCAAACCACAGAACTTCGTCCACAT
TTGCACAACCCTGCAGTTCCAACCATTGAACCCGCGAGTGTTACTTGTCAATCTGATGCC
AATGCAGATCAATTGTTCGATGAATTGCCTAAATGTGATGCAGTATCTGCTACAGCTTTG
GTTGTCCGTTTTGCTAAATTGAATCAACACAAGAAAGCAATAACATTCTTCTCAAGAATG
TTTGAGTTTTATATTAGACCCAATGAGTTCACTTTAGGCACTGTAATTCACTCCTCTGTT
GTTCTGAAAGACCTTAATTCAGGAAAGCAAATTCATGCCATTTCCATAAAATTTGGCCTT
CACTCAAATGTTTACGTGGGTAGTGCACTTTTGGATCTTTATGTAAAGCTAAGCAGCATT
GAGGAAGCTCAGCTTGTTTTTCAGGATACCCACAAACCAAATGTGGTTTCTTACACCACT
TTAATATGTGGGTATCTCAAAAAAGAGAAGTTTAATGAAGCTATTGAAATCTTTAGGACA
ATCCCAGAAAGAAATGTTGTTTCTTGGAATGCTATGATTAGTGGGTATAGCCAGAGAGGA
CGTAACGAAGAGGCTGTTAATCTTTTCGTTGAGATGTTGAGACAACGTGTTGTACCTGAT
CAATCGACGTTCCCTTCTTTGTTCAGTGCAGCTGCCAATATTGCAGCATTGGGAAGGGGA
AAGAGTTTCCATGCTTGTGCGGTGAAATTCTTGGGCGGACTTGGTTTGTTTATAGGCAAT
TCTCTTGTTAGCTTTTATGCGAAATGTGGGAGCTTAGAGGATAGTTTTCGGGTTTTCAAT
AGACTTCCTGAAAGAAATGTTGTAACTTGGAATGCTCTAATATGTGCTCATGCTCAAAAT
GGGAGAGGGAAAGTAGCAATTGAATTGTTCCAGAAAATGAAAGACATGGGAATTAAGCCA
AATAGTGTCACTCTTCTTGGTTTGTTATTAGCATGTAGTCACGTTGGTCTTGTTGATGAG
GCTTATTCATATTTCGAGCAGGCAAGAATTCAGGATGCTAGTTTGCTGAAATCTGAACAC
TATGCATGTATGGTTGATATATTATCGCGTTCAGGGAGGTTTCAACAAGCTGAGAAGTTT
ATTCATGAGTTGCCGTTTGATCCAGGTATCGGCTTTTGGAAGGCATTGTTGGGAGGCTGC
CAGATTCACTCGAATACAAAGCTAGGGGAATATGCTGCCCAAAAGGTATTGGCTTTAGAG
CCCAGAGATGTGTCATCATACGTGATGCTTTCAAACGCACATTCTGCTGCTGGAAGATGG
CAGAGCGTGTCAGTCGTAAGGAATGAAATGAAGGTAAAAGGACTGAAGACAGTCCCTGGG
TGTAGTTGGGTTGAAATTAAATGCAAAATTCATGTATTTGTTACTGGAGACAACAGATAT
ACCCGCAAGCCTGAGATTTATGAACTACTGGATTACTTTCTTATGCATGCAATGAAGAGC
CAAGAAACTGATTTTTTTCACGAATCTTGA

Peptide Sequence

PEP ID

XP_016484653.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like [Nicotiana tabacum]
Sequence

MNHLYLLRSIRLTFQYLPVYIRFQSSPCRRLRQTTELRPHLHNPAVPTIEPASVTCQSDA
NADQLFDELPKCDAVSATALVVRFAKLNQHKKAITFFSRMFEFYIRPNEFTLGTVIHSSV
VLKDLNSGKQIHAISIKFGLHSNVYVGSALLDLYVKLSSIEEAQLVFQDTHKPNVVSYTT
LICGYLKKEKFNEAIEIFRTIPERNVVSWNAMISGYSQRGRNEEAVNLFVEMLRQRVVPD
QSTFPSLFSAAANIAALGRGKSFHACAVKFLGGLGLFIGNSLVSFYAKCGSLEDSFRVFN
RLPERNVVTWNALICAHAQNGRGKVAIELFQKMKDMGIKPNSVTLLGLLLACSHVGLVDE
AYSYFEQARIQDASLLKSEHYACMVDILSRSGRFQQAEKFIHELPFDPGIGFWKALLGGC
QIHSNTKLGEYAAQKVLALEPRDVSSYVMLSNAHSAAGRWQSVSVVRNEMKVKGLKTVPG
CSWVEIKCKIHVFVTGDNRYTRKPEIYELLDYFLMHAMKSQETDFFHES

Transcript Sequence

Gene sequence data has not been registered.